MPRAsnakeflow
Installation & Getting Started
Getting Started
Installation
Config File
Experiment file
Running MPRAsnakeflow on HPC Cluster
Workflows
Overview
Assignment
Experiment (Count)
Further documentation
Best practice
Tutorial
Adapter trimming
Examples
Examples Overview
Basic assignment workflow
Basic Experiment Workflow
Combined Workflow
ENCODE data (Gosai et al. Plasmid based)
GSE174534 (Abell et al. Complex Read Structure)
GSE306816 (Zhang et al. dpSTR MPRA)
GSE293036 (Granitto et al. GWAS variant MPRA)
GSE316891 (Yan et al. L1a1 MPRA)
GSE284330 (Zaratiana et al. STARR-seq like assay)
GSE325670 (Hauser et al. Variant MPRA)
GSE271608 Zahm et al.
GSE307247 Koplik et al.
Tips & Tricks
Frequently Asked Questions
Project Info
Contributing
Authors
History
MPRAsnakeflow License
MPRAsnakeflow
Index
Index