MPRAsnakeflow

Installation & Getting Started

  • Getting Started
  • Installation
  • Config File
  • Experiment file
  • Running MPRAsnakeflow on HPC Cluster

Workflows

  • Overview
  • Assignment
  • Experiment (Count)

Further documentation

  • Best practice
  • Tutorial
  • Adapter trimming

Examples

  • Examples Overview
  • Basic assignment workflow
  • Basic Experiment Workflow
  • Combined Workflow
  • ENCODE data (Gosai et al. Plasmid based)
  • GSE174534 (Abell et al. Complex Read Structure)
  • GSE306816 (Zhang et al. dpSTR MPRA)
  • GSE293036 (Granitto et al. GWAS variant MPRA)
  • GSE316891 (Yan et al. L1a1 MPRA)
  • GSE284330 (Zaratiana et al. STARR-seq like assay)
  • GSE325670 (Hauser et al. Variant MPRA)
  • GSE271608 Zahm et al.
  • GSE307247 Koplik et al.

Tips & Tricks

  • Frequently Asked Questions

Project Info

  • Contributing
  • Authors
  • History
  • MPRAsnakeflow License
MPRAsnakeflow
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© Copyright 2024, Max Schubach.

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